MmuEX6099713 @ mm10
Exon Skipping
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26367735-26369612:-
Coord C1 exon
chr2:26369139-26369612
Coord A exon
chr2:26368144-26368408
Coord C2 exon
chr2:26367735-26367805
Length
265 bp
Sequences
Splice sites
3' ss Seq
GGACTCGTCCACCCACCCAGAGT
3' ss Score
2.4
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAGAAACAGCATCTGCAGAGGAAGAGAGGGCAGAGGCCCCGTCACAGTAGCCAGTGGAGCTCTAGCGGCAGCAGCAGCAGCAGCAGTGAAGACTACGGCAGCAGCAGTGGCAGCGACGGCAGCAGCGGCAGTGAAAACTCAGATGTGGAGCTGGAGGCGTCTCTGGAGAAGAGTAGAGCACTGACTCCTCAACAGTACAGAGTGCCAGACATTGACCTGTGGGTTCCTACCAGGCTGATCACCAGCCAGTCACAGAGAGAAGGGACAGGGTGCTACCCACAACACCCTGCTGTCTCCTGCTGCACTCAGGATGCCTCTCAAAATCACCACAAGGAAGGTTCTACCACCGTCTCTGCTGCTGAGAAAAACCAGCTGCAGGTGCCCTATGAGACCCACAGCACTGTTCCAAGAGGAGACCGGTTCCTACACTTCTCGGACACCCACTCAGCAAGTTTGAAGGATCCGGCCTGCAAG
Seq A exon
AGTCACACACTGATGAAGGAAAGACCGAAGCAGCCACTCCTCCCTAGTTCACGCTCAGGGTCTGACCCTGGCAACAATACGGCTGGGCCCCATCTGCGGCAGCTATGGCATGGAACTTACCAGAATAAGCAGAGACGCAAGAGACAGGCTCTACATCGCAGGCTCCTTAAGCACAGGCTTTTGCTGGCTGTGATACCCTGGGTGGGTGACATCAACCTGGCCTGCACACAAGCTCCCCGGAGACCTGCAACCGTTCAGACTAAAG
Seq C2 exon
CTGACAGCATCCGGATGCAGTTAGAGTGTGCCCGCCTGGCCAGCACTCCGGTATTCACACTGCTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.712 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCACCAGCCAGTCACAGA
R:
GTGTGAATACCGGAGTGCTGG
Band lengths:
299-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types