HsaEX0060640 @ hg38
Exon Skipping
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr9:136381322-136382336:-
Coord C1 exon
chr9:136382253-136382336
Coord A exon
chr9:136381824-136382073
Coord C2 exon
chr9:136381322-136381392
Length
250 bp
Sequences
Splice sites
3' ss Seq
GTGCTGCCTTCTCCTTACAGAAA
3' ss Score
11.9
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGTGGGAGGCGTCTGCTGACAGTGCCTGTGGAGACCGTGCTGAGGGTGCTCAGGGCCAACACGGCTGCTCGGAGCTGCACACAG
Seq A exon
AAAGAGCAGCTGAGGCAGCCACCCCTGCCCACCTCATCCCCAGGGGTCAGCTCTGGTGACAGCGTGGCCCGATCCCATGTGCAGTGGCTACGGCACAGAGCCACCCAGAGTGGGCAGCGGCGCTGGAGACACGCTCTGCACCGGAGGCTCCTGAACCGCAGGCTGCTGCTGGCTGTGACCCCTTGGGTAGGGGACGTTGTCGTGCCCTGCACACAGGCTTCCCAGAGACCCGCCGTAGTGCAGACTCAAG
Seq C2 exon
CGGATGGCCTCAGGGAGCAGCTGCAGCAGGCCCGCCTGGCCAGCACCCCTGTGTTTACCCTGTTTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684-'31-40,'31-36,32-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.548 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGTCTGCTGACAGTG
R:
GGGTAAACAGGGTAAACACAGGG
Band lengths:
148-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development