RnoEX0084263 @ rn6
Exon Skipping
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3813490-3815290:-
Coord C1 exon
chr3:3814814-3815290
Coord A exon
chr3:3813858-3814122
Coord C2 exon
chr3:3813490-3813560
Length
265 bp
Sequences
Splice sites
3' ss Seq
GTACTCGTCCCACCACCCAGAGC
3' ss Score
4.82
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
AAAAAACAGCATCTCCAGAAGAGGCGAGGGCAGAGGTCCCGTCACAGTAGCCAGTGGAGTTCCTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCAGTGAGGACTATGGCGGTGGCAGCAGCAGCAGCAGCAACAGCAGTGAAGACTCAGAGGTAGAACTGGAGGAGCCTTTGCAGAATAGCAGAGCATTGGCTCCTCAACAGTACAGCGTGCCAGACATCGACCTGTGGGTTCCTACCAGACTGATCGACAGCCGGTCACAGAGAGAGGAGACAGGGTGCTACCCAGTACACCCTGCTGTCTCCTGCCGTACTCAAAATCACCACAAGGAAGGTTCTACCGTAGTCTCTGCTCCTGAGAGAAACCAGATGCAGGAGTGCTGTGAGACCCACAGCACTGTTCCCAGAGGAGTCCAGTCCCTGCACTCCTCAGACACTCACGGAGCAAGTGTGAAGGAGCCAGCCTGCAAG
Seq A exon
AGCCACACACTGGTGAAGGAAAGACGGAGGCAGCCACCTCTGCCTAATTCACGCTCAGGGTCTGACCCTGGTAACAGTATGGCTGGGCCCCATCTACGGCGGCTGTGGCATGGAACTTTCCAGAATAAGCAGAGACGCAAGAGACAGGCTCTACATCGAAGGCTCCTGAAGCACAGGCTCCTGCTGGCTGTGATACCCTGGGTGGGTGACATCAACCTGGCTTGCACACAAGCTGTCCAGAGACCTGCAGCTGTACAGACTCAAG
Seq C2 exon
CTGACAGCATCAGGATGCAGCTGGAGTGTGCACGCCTGGCCAGCACTCCAGTGTTCACATTGTTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845-'17-25,'17-23,18-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=0.584 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAACAGTACAGCGTGC
R:
CACTCCAGCTGCATCCTGATG
Band lengths:
306-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]