GgaEX1054438 @ galGal4
Exon Skipping
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7901022-7906809:+
Coord C1 exon
chr17:7901022-7901107
Coord A exon
chr17:7903134-7903204
Coord C2 exon
chr17:7906677-7906809
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTGGGCCTTCTTTTCTAGCTT
3' ss Score
8.32
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCACTGGAGTAAAATAGCTTCTGAGTTGCCACATCGGACTCGCTCCCAGTGCCTGAGCAAGTGGAAAATCATGATTGGGTCGAAG
Seq A exon
CTTATTCTATTCAACAGAAGCTCAAGTCGGTCAGTCTCTCCAGCACTCCCCTGTTCACACTCTTCATTCAG
Seq C2 exon
GGCATGGAAACTGAAGACAGTGCTGCACAATCCATCGTGGGCACCTGCACTGATGGGACTGCCAGTGTTCCCCAAATCAGGAGAAGTGTGCGCATCAGGAAGAGGTTCACAAAGAGGAGGAGGGTGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910_MULTIEX2-4/7=C1-C2
Average complexity
C3
Mappability confidence:
83%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTTGCCACATCGGACTC
R:
CTTCCTGATGCGCACACTTCT
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]