DreEX6013258 @ danRer10
Exon Skipping
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50528091-50531305:-
Coord C1 exon
chr5:50530835-50531305
Coord A exon
chr5:50528318-50528410
Coord C2 exon
chr5:50528091-50528223
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATGATATTTCATCTTTGCAGACT
3' ss Score
9.14
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AAAAAACCCCTAAAAAGACCACTATCAAGCATAACAACAAGCTATCCAAGAAATAAACGACAAAAATTGCTGAAAACAGTTAAAGAAGAGATGTTTTTCAACTCCAGCTCTGATGACGAAAGCCAGATAAACTATATGAACAGTGACGAATCAGACGATCTCGCAGAAGATGAAAATCTGGAAATACCACAGAAGGAATACGTGCAAACAGAAATGAAGGAATGGATTCCTAGAAATGCGATGGTATGGACGATTACTCCAGGAAGTTTCAGAACATTATGGGTCCGTCTTCCCACCAATGAAGAGGAGCTACGGGAGTCCACTAAAGAGTCCGGCTTAGGCTCCGATTCTTCAGAGAACAGCGCGTGTCCAAATGATGAGCCCATAATGGAGCGCAACACCATTCTGGACCGCTTTGGAGACGTGGAAAGGACTTACGTTGGCATGAATACTGTTGTCTTGCACAGACGG
Seq A exon
ACTGACGATGAGAAGGCCATGTTCAAAGTGTGCATGAGTGATGTTAAACAATTCATTCAAATGAAAGCAACAGAATTCGCTGTGAAGAAAAAG
Seq C2 exon
AAGAAAATAAAAAATAAAAAAAGGACTTTACGGGATGTGTTTAGCCTTAATACTGACCTCCAAAAAGCTGTCATCCCATGGATTGGTAATGTGATCATATCTACTCCAGCGAATGAAGCCATCTTTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673-'25-27,'25-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.380 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAGACGTGGAAAGGA
R:
GATGGCTTCATTCGCTGGAGT
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]