HsaEX0060644 @ hg38
Exon Skipping
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr9:136380740-136382073:-
Coord C1 exon
chr9:136381824-136382073
Coord A exon
chr9:136381322-136381392
Coord C2 exon
chr9:136380740-136380850
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTATCCCCCTGTGCCCGCAGCGG
3' ss Score
10.76
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAAGAGCAGCTGAGGCAGCCACCCCTGCCCACCTCATCCCCAGGGGTCAGCTCTGGTGACAGCGTGGCCCGATCCCATGTGCAGTGGCTACGGCACAGAGCCACCCAGAGTGGGCAGCGGCGCTGGAGACACGCTCTGCACCGGAGGCTCCTGAACCGCAGGCTGCTGCTGGCTGTGACCCCTTGGGTAGGGGACGTTGTCGTGCCCTGCACACAGGCTTCCCAGAGACCCGCCGTAGTGCAGACTCAAG
Seq A exon
CGGATGGCCTCAGGGAGCAGCTGCAGCAGGCCCGCCTGGCCAGCACCCCTGTGTTTACCCTGTTTACCCAG
Seq C2 exon
CTGTTCCACATCGATACTGCCGGCTGCTTGGAGGTCGTCCGAGAGAGGAAGGCCCTGCCACCCAGGCTGCCCCAGGCTGGTGCTCGGGACCCACCAGTTCATCTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684-'32-41,'32-40,33-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.250 C2=0.514
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGGTAGGGGACGTTGTC
R:
GAAGATGAACTGGTGGGTCCC
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development