RnoEX0084264 @ rn6
Exon Skipping
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3812925-3814122:-
Coord C1 exon
chr3:3813858-3814122
Coord A exon
chr3:3813490-3813560
Coord C2 exon
chr3:3812925-3813035
Length
71 bp
Sequences
Splice sites
3' ss Seq
CATTTGCCCTTGTCCTCTAGCTG
3' ss Score
8.22
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGCCACACACTGGTGAAGGAAAGACGGAGGCAGCCACCTCTGCCTAATTCACGCTCAGGGTCTGACCCTGGTAACAGTATGGCTGGGCCCCATCTACGGCGGCTGTGGCATGGAACTTTCCAGAATAAGCAGAGACGCAAGAGACAGGCTCTACATCGAAGGCTCCTGAAGCACAGGCTCCTGCTGGCTGTGATACCCTGGGTGGGTGACATCAACCTGGCTTGCACACAAGCTGTCCAGAGACCTGCAGCTGTACAGACTCAAG
Seq A exon
CTGACAGCATCAGGATGCAGCTGGAGTGTGCACGCCTGGCCAGCACTCCAGTGTTCACATTGTTTATTCAG
Seq C2 exon
CTGTTGCAGATTGATACTGCGGGCTGCATGGAGGTGGTTCAAGAGAGGAAAACCCAGCCACCTGCACTGCTCCAGCCTGGCACCCGGAACACCCAGCCACATCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845-'18-26,'18-25,19-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.584 A=0.042 C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTCTACATCGAAGGCT
R:
CTCTTGAACCACCTCCATGCA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]