DreEX0074091 @ danRer10
Exon Skipping
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50526610-50528223:-
Coord C1 exon
chr5:50528091-50528223
Coord A exon
chr5:50526758-50526828
Coord C2 exon
chr5:50526610-50526675
Length
71 bp
Sequences
Splice sites
3' ss Seq
AATCAATAATCACTTTGCAGGGG
3' ss Score
5.2
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
AAGAAAATAAAAAATAAAAAAAGGACTTTACGGGATGTGTTTAGCCTTAATACTGACCTCCAAAAAGCTGTCATCCCATGGATTGGTAATGTGATCATATCTACTCCAGCGAATGAAGCCATCTTTTGTGAAG
Seq A exon
GGGATATTGTTGGAATCAAAGCAGCAAGCATCAGGCTCCAGAAGACATCAGTGTTTACATTTTTTATCAAA
Seq C2 exon
GCTTTTCACGTTGATGTCAATGGTTGCAGGACTGTCATTGAAATTCACAAAAAGCTAGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000097473fB6180
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGACTTTACGGGATGTGT
R:
TTTGTGAATTTCAATGACAGTCCTGC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]