MmuEX6099714 @ mm10
Exon Skipping
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26367191-26368408:-
Coord C1 exon
chr2:26368144-26368408
Coord A exon
chr2:26367735-26367805
Coord C2 exon
chr2:26367191-26367301
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCCTTGTCCTCTAGCTG
3' ss Score
10.02
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGTCACACACTGATGAAGGAAAGACCGAAGCAGCCACTCCTCCCTAGTTCACGCTCAGGGTCTGACCCTGGCAACAATACGGCTGGGCCCCATCTGCGGCAGCTATGGCATGGAACTTACCAGAATAAGCAGAGACGCAAGAGACAGGCTCTACATCGCAGGCTCCTTAAGCACAGGCTTTTGCTGGCTGTGATACCCTGGGTGGGTGACATCAACCTGGCCTGCACACAAGCTCCCCGGAGACCTGCAACCGTTCAGACTAAAG
Seq A exon
CTGACAGCATCCGGATGCAGTTAGAGTGTGCCCGCCTGGCCAGCACTCCGGTATTCACACTGCTTATTCAG
Seq C2 exon
CTATTGCAGATTGATACTGCGGGCTGCATGGAGGTGGTTCGAGAGAGGAAAAGCCAGCCCCCTGCACTGCTCCAGCCTGGCACCCGGAACACCCAGCCGCATCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281-'37-40,'37-37,38-40=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=0.069 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGGCTCTACATCGCAGG
R:
CCTCTCTCGAACCACCTCCAT
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types