BtaEX6047175 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000054 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr11:103889323-103890721:-
Coord C1 exon
chr11:103890437-103890721
Coord A exon
chr11:103889947-103890017
Coord C2 exon
chr11:103889323-103889438
Length
71 bp
Sequences
Splice sites
3' ss Seq
ACGTGTCCGTGTCCCTGCAGCTG
3' ss Score
11.77
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CAGAGCCCAGCCCGCATGCCAGAGGCCTTTCTCTCCCCAAGCAGGAGAGGCTGAGGCAGCCTCACCCGCCTGGCTCAGCCCCAGGGCTTAGCCCTGGCGGCGGCAGCAGGGACGAGGCCAGGCCCCGCGTGCAGCCACAGTGGGCCAGGACCGCGCAGCGGCGCCAGGGACACGCCCTGCAGAGGAGGCTCCTGGAGCACAAGCTTCTGACGGCCGTGAGCCCATGGGTGGGAGAGGTCGACCTGCTGTGCGCTCGCCCGAGGCCCGCCATGCGGCCACGTCGAG
Seq A exon
CTGATGGTATCAGGAGACAGCTCCAGGGCGCCCACCTGGCCAGCACCCCAGTGTTTGCCCTCCTCATTCAG
Seq C2 exon
CTGTTCCAGATCGACGTGACTGGCTGCATGGAGGTGGTTCGAGAGAGGAAGGCCTGGCCGCCCGCCCTGCTCCAGGCTGGTGCCGGGGACCCGCTGCCCCTGCAGGTGAGGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000054-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.746 A=0.417 C2=0.296
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGCCCTGCAGAGGAG
R:
CCTTCCTCTCTCGAACCACCT
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]