GgaEX1054438 @ galGal3
Exon Skipping
Gene
ENSGALG00000001910 | SNAPC4
Description
NA
Coordinates
chr17:8591882-8592686:+
Coord C1 exon
chr17:8591882-8592131
Coord A exon
chr17:8592233-8592303
Coord C2 exon
chr17:8592612-8592686
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGTTGGGCCTTCTTTTCTAGCTT
3' ss Score
8.32
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCGCAGCAGTCAAAGCTAATAATGTCTTCTGCTGCCACTTTAACAAAGACGTCTGGAGTTGGTGCATCTGCTGCTGAGAAGCACAGGGGGCTGTGGAGCACCATGGGGAAAAGTCGTCGTCAAGAGAGAGCACGTTGGAGAAAAATGAACCTTGACAGAAAACTCCTCATGGCAGTGACACCTTGGGTGGGCGACGTGCTATTGCCTTGCACTTTGCGAGCTGGGAAGATGGCTTTTGATCAAACAAAAG
Seq A exon
CTTATTCTATTCAACAGAAGCTCAAGTCGGTCAGTCTCTCCAGCACTCCCCTGTTCACACTCTTCATTCAG
Seq C2 exon
CTCTTTCGGATTGACACCAATGGCTGCATGAAGATCATTCGGGAGAGAAGGGCCGATGCAGCGAGGCCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910-'26-29,'26-27,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCACCATGGGGAAAAGTC
R:
CAGCCATTGGTGTCAATCCGA
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]