GgaALTA0001005-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1331589-1332048:+
Coord C1 exon
chr11:1331589-1331708
Coord A exon
chr11:1331887-1331891
Coord C2 exon
chr11:1331892-1332048
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTGAGCATCGGGGTTTCAGAGC
3' ss Score
2.58
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTTGATCTGAAAGTGGGCATGGAGCAGCTGGCCAGAAATCACACCTTCAAGTGCATCCTGGCCACGCTGTTGGCCATGGGCAACTTCCTGAATGGCTCCCAG
Seq A exon
AGCAG
Seq C2 exon
AGGCTTTGAGCTGGGCTATCTGGAGAAGGTGTCGGAGGTGAAGGACACAGTGCACCGGCAGTCCCTGCTCCACCACCTCTGCCAGATGGTGGTGGAGAAGTTCCCAGAAACCACGGACCTCTACTCAGAGATCGCCTCCATCACGCGATCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198-18-20,18-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCAGAAATCACACCTT
R:
CCTTCTCCAGATAGCCCAGCT
Band lengths:
105-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]