HsaALTA0003363-3/3 @ hg19
Alternative 3'ss
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67265199-67265452:-
Coord C1 exon
chr16:67265333-67265452
Coord A exon
chr16:67265248-67265252
Coord C2 exon
chr16:67265199-67265247
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCAGAAAGGGTCCTTTCAGAGC
3' ss Score
-1.73
Exon sequences
Seq C1 exon
GAAATTGCTGAGCCACTGTTTGACCTGAAAGTGGGTATGGAACAGCTGGTACAGAATGCCACCTTCCGCTGCATCCTGGCTACCCTCCTAGCGGTGGGCAACTTCCTCAATGGCTCCCAG
Seq A exon
AGCAG
Seq C2 exon
CGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAGGTGAAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-24-27,24-26,24-25-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGAATGCCACCTTCCG
R:
CAGGTAGCTCAGCTCAAAGCC
Band lengths:
95-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)