GgaALTA0001005-4/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1348643-1349102:+
Coord C1 exon
chr11:1348643-1348762
Coord A exon
chr11:1348941-1349030
Coord C2 exon
chr11:1349031-1349102
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACTGAGCATCGGGGTTTCAGAGC
3' ss Score
2.58
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTTGATCTGAAAGTGGGCATGGAGCAGCTGGCCAGAAATCACACCTTCAAGTGCATCCTGGCCACGCTGTTGGCCATGGGCAACTTCCTGAATGGCTCCCAG
Seq A exon
AGCAGAGGCTTTGAGCTGGGCTATCTGGAGAAGGTGTCGGAGGTGAAGGACACAGTGCACCGGCAGTCCCTGCTCCACCACCTCTGCCAG
Seq C2 exon
ATGGTGGTGGAGAAGTTCCCAGAAACCACGGACCTCTACTCAGAGATCGCCTCCATCACGCGATCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198-22-30,22-29,22-28,22-27,22-26-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGAAAGTGGGCATGGAGC
R:
CTTGGCAGATCGCGTGATGG
Band lengths:
170-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]