BtaALTA0011839-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34979283-34979641:-
Coord C1 exon
chr18:34979522-34979641
Coord A exon
chr18:34979440-34979444
Coord C2 exon
chr18:34979283-34979439
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCAGATGGGGTCATTTCAGAGC
3' ss Score
1.74
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTCGACCTGAAAGTGGGCATGGAACAACTGGTGCAAAATGCCACCTTCCGCTGCATCCTGGCCACCCTGCTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
Seq A exon
AGCAG
Seq C2 exon
CGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTGAAGGACACGGTGCGCCGCCAGCCCCTGCTGCACCACCTGTGCGCCCTGGTGCTGCAGGCCCGGCCTGACTCCTCCGACCTGTACTCGGAGATCCCCGCCCTGGCCCGCTGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427-27-37,27-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGGTGCAAAATGCCACC
R:
CAGGTAGCTCAGCTCAAAGCC
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development