GgaALTA0001138-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2824477-2824849:-
Coord C1 exon
chr28:2824743-2824849
Coord A exon
chr28:2824516-2824580
Coord C2 exon
chr28:2824477-2824515
Length
65 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CCTCACCCTTGTCCCCGCAGCTT
3' ss Score
11.02
Exon sequences
Seq C1 exon
TGCTTCGGGCTGCTGGGGGTGAACGGTGCAGGGAAGACATCCACCTTCAAGATGCTGACGGGGGACACCGAAGTGACGCTGGGGGAGGCCTGGCTGAAGGGACACAG
Seq A exon
CTTGTCCCTGGTTCCTGCAGCTTGCCCCTCGTCCCACAGCGTACTCACCATGTCCCATCCTGCAG
Seq C2 exon
CGTGCTCACCGACCTGCAGGCTGTCCATCAGAACATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-48-54,48-53,48-52,48-51-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGGGTGAACGGT
R:
CCCATGTTCTGATGGACAGCC
Band lengths:
137-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]