GgaEX0003086 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2824374-2824976:-
Coord C1 exon
chr28:2824914-2824976
Coord A exon
chr28:2824743-2824849
Coord C2 exon
chr28:2824374-2824515
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTAAGCCCACTGCTCCACAGTGC
3' ss Score
4.3
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTGTATCGGTACCGACGTGCTCCAGCAGTGGACCGGCTGTGCCTGGCTGTCCCACCTGGTGAG
Seq A exon
TGCTTCGGGCTGCTGGGGGTGAACGGTGCAGGGAAGACATCCACCTTCAAGATGCTGACGGGGGACACCGAAGTGACGCTGGGGGAGGCCTGGCTGAAGGGACACAG
Seq C2 exon
CGTGCTCACCGACCTGCAGGCTGTCCATCAGAACATGGGGTACTGCCCGCAGTTTGATGCCATCACGGAGCTGCTGACGGGAAGGGAGCATCTGCAGTTCTACAGCCGTCTGCGTGGGGTGCCGGAGGAGGAGACCCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTACCGACGTGCTCC
R:
GGTCTCCTCCTCCGGCAC
Band lengths:
194-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]