MmuEX0003011 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79474869-79476505:+
Coord C1 exon
chr10:79474869-79474931
Coord A exon
chr10:79476057-79476163
Coord C2 exon
chr10:79476364-79476505
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGTCTGCATGTTCCTTGCAGTGT
3' ss Score
6.44
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTTTACCGTGGGCAGAGGAACCCAGCTGTGGATCGCCTGTGCTTAGGGATCCCCCCTGGGGAG
Seq A exon
TGTTTCGGGCTGCTGGGTGTCAACGGGGCAGGGAAGACATCCACCTTCCGCATGGTGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAGTACTGGCAGGCCACAA
Seq C2 exon
CGTGGCCCAGGAGCGGTCTGCCGCACACCGCAGCATGGGCTACTGTCCCCAGTCTGATGCCATCTTCGACCTGCTGACCGGCCGGGAACATCTGGAACTGTTTGCTCGCCTGCGCGGGGTGCCCGAGGCCCAAGTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'43-49,'43-48,44-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.125
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTACCGTGGGCAGAGGAAC
R:
GCGCAGGCGAGCAAACAG
Band lengths:
178-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: