BtaEX0001718 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45178387-45179929:+
Coord C1 exon
chr7:45178387-45178449
Coord A exon
chr7:45179463-45179569
Coord C2 exon
chr7:45179788-45179929
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGGGTATACCTGCAGTGT
3' ss Score
4.99
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGTACCCTGGGCAGAGGACACCAGCTGTTGACCGCCTGTGCCTGGGGATCCCCCCTGGTGAG
Seq A exon
TGTTTCGGGCTGCTGGGCGTGAACGGAGCAGGGAAAACATCCACATTCCGCATGGTGACTGGGGACACGCTGCCCAGTGGGGGTGAGGCCATTCTGGAAGGCCACAG
Seq C2 exon
CGTGGCCCAGGAACCGGCTGCAGCTCACCGCCGCATGGGCTACTGCCCTCAGTCGGATGCCATCTTCGAGCTGCTGACCGGTCGTGAGCACCTGGAGCTGTATGCACGCCTGCGAGGAGTCCCCGAAGCCCAAGTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=0.167
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCTGGGCAGAGGACAC
R:
CTGGGCAACTTGGGCTTCG
Band lengths:
203-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development