RnoEX0004931 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12744209-12745714:-
Coord C1 exon
chr7:12745652-12745714
Coord A exon
chr7:12744546-12744652
Coord C2 exon
chr7:12744209-12744350
Length
107 bp
Sequences
Splice sites
3' ss Seq
GATTTGTGGGTTCCTTACAGTGT
3' ss Score
6.31
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGTACCGTGGGCAGAGGAGCCCAGCAGTGGATCACCTGTGCTTGGGGATCCCCCCTGGGGAG
Seq A exon
TGTTTCGGGCTGCTGGGTGTCAATGGGGCAGGGAAGACATCCACCTTCCGCATGGTGACGGGGGACACGCTGCCCAGCAGTGGTGAAGCAGTGCTGGCAGGCCACAA
Seq C2 exon
TGTGGCCCAGGAGCCGTCTGCTGCGCACCGCAGCATGGGCTACTGTCCCCAGTCTGATGCCATCTTCGACCTGCTGACCGGCCGGGAACATCTAGAACTGTTTGCGCGCCTGCGCGGGGTGCCCGAGGCCCAAGTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.361 C2=0.167
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
ENSRNOT00000064886fB315
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCGTGGGCAGAGGAG
R:
GCGCGCAAACAGTTCTAGATG
Band lengths:
171-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]