DreEX6090512 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5701947-5702514:+
Coord C1 exon
chr11:5701947-5702009
Coord A exon
chr11:5702117-5702223
Coord C2 exon
chr11:5702373-5702514
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTACTGCCGTTTCAGTGT
3' ss Score
7.44
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTATACAAAGCAGGTAGAAAGCCAGCAGTGAATCGGCTTTGCTTGGGCATTCCTCGAGGAGAA
Seq A exon
TGTTTTGGGCTTCTTGGTGTTAACGGCGCTGGGAAAACCTCAACCTTCCGTATGCTAACAGGAGACACCCGGATCACATATGGAGAAGCGTTTCTTAGCAACCAAAG
Seq C2 exon
CGTTCTTACAGAAATGGAGAAGGTTCATCAGCTGATGGGCTACTGTCCTCAGTTTGATGCCATCATTGACCTGCTGACGGGACGAGAGCACTTGGAGTTTTACGCTCGCCTCAGAGGAGTGCCCGAGTCTTATGTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAGCAGGTAGAAAGCCAGC
R:
CTTTTCAACATAAGACTCGGGCAC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]