GgaEX6050617 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53605308-53606478:-
Coord C1 exon
chrZ:53606409-53606478
Coord A exon
chrZ:53605846-53605952
Coord C2 exon
chrZ:53605308-53605449
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTTTTATATCCACAGTGT
3' ss Score
9.05
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTTCAGATTTATAGAATGAAACGAAAGCCAGCAGTTGACAGGATATGTGTTGGAATCCCTCCTGGAGAG
Seq A exon
TGTTTTGGACTTCTGGGAGTAAATGGTGCTGGCAAGTCATCCACTTTCAAGATGCTAACTGGTGATACAGATGTGACAGGAGGAGATGCTTTTCTCAAAGGAAACAG
Seq C2 exon
TATCCTGTCGAACATCCAAGAAGTCCATCAGAACATGGGCTACTGTCCGCAGTTTGATGCTGTTAATGAACTGCTGACAGGGCGAGAACACTTGGAGTTCTTTGCACTCCTCAGAGGTGTTCCCGAGAAAGAAGTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'56-72,'56-71,57-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(6.0=53.5),PF0000522=ABC_tran=PU(7.6=25.6)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAGAATGAAACGAAAGCCAGCAGT
R:
CTTGCAAACTTCTTTCTCGGGA
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]