RnoEX0004748 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69865278-69868928:-
Coord C1 exon
chr5:69868866-69868928
Coord A exon
chr5:69867776-69867882
Coord C2 exon
chr5:69865278-69865419
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACCTAGTCTTGCTTTTCAGTGC
3' ss Score
6.94
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ATCTACAGAAGGAAGCGGAAGCCTGCAGTGGACAGAATCTGCGTTGGCATCCCTCCTGGAGAG
Seq A exon
TGCTTTGGACTCCTGGGAGTTAATGGAGCTGGGAAGACATCAACATTCAAGATGCTGACTGGAGATACCGCTGTGACCAGAGGGGATGCTCTTCTTAACAAGAACAG
Seq C2 exon
CATCTTATCAAACATCCATGAAGTACATCAAAACATGGGCTACTGCCCTCAGTTCGATGCCATCACGGAGCTTCTGACTGGAAGAGAGCATCTGGAGTTCTTTGCCCTTCTCAGGGGAGTCCCAGAAAAAGAAGTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'57-58,'57-57,58-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACAGAAGGAAGCGGAAG
R:
TGCCAACTTCTTTTTCTGGGACT
Band lengths:
203-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]