BtaEX6035703 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96278711-96282022:-
Coord C1 exon
chr8:96281960-96282022
Coord A exon
chr8:96281074-96281180
Coord C2 exon
chr8:96278711-96278852
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACTGATCCAATCATTTTCAGTGC
3' ss Score
7.22
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTATACAGAAGAAAGAGGAAACCTGCTGTTGACAGGATCTGCGTTGGCATTCCTCCTGGTGAG
Seq A exon
TGCTTTGGACTTCTGGGTGTTAATGGAGCTGGGAAATCATCAACTTTCAAGATGTTAACGGGAGATACCACTGTTACCAGAGGAGATGCTTTCCTTAACAAAAATAG
Seq C2 exon
TATCTTATCAGACATCCATGAAGTCCATCAGAACATGGGCTATTGCCCTCAGTTTGATGCCATCACAGAGCTGCTGACTGGAAGAGAACACGTGGAGTTCTTTGCCCTTTTGAGAGGAGTCCCAGAGAAAGAAGTAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'52-54,'52-53,53-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAAGAAAGAGGAAACCTGCTG
R:
CTTGCCTACTTCTTTCTCTGGGAC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]