MmuEX6093501 @ mm10
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53038619-53041601:-
Coord C1 exon
chr4:53041539-53041601
Coord A exon
chr4:53040719-53040825
Coord C2 exon
chr4:53038619-53038760
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACCTAGTCTCGCTTTTCAGTGC
3' ss Score
7.09
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATCTATAGGAGGAAGCGGAAGCCTGCAGTCGACAGGATCTGCATCGGCATCCCTCCCGGAGAG
Seq A exon
TGCTTTGGACTCCTGGGAGTTAACGGAGCTGGGAAGTCAACAACTTTCAAGATGCTGACTGGAGACACCCCTGTGACCAGAGGGGATGCGTTCCTTAACAAAAACAG
Seq C2 exon
CATCTTATCAAATATCCATGAAGTACACCAGAACATGGGCTACTGCCCTCAGTTTGACGCCATCACAGAGCTGCTGACGGGAAGAGAGCATGTGGAGTTCTTTGCCCTCCTGAGGGGAGTCCCAGAAAAGGAAGTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'60-66,'60-65,61-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTGCAGTCGACAGGAT
R:
TGCCAACTTCCTTTTCTGGGAC
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types