DreEX6033520 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51982816-51983493:+
Coord C1 exon
chr1:51982816-51982878
Coord A exon
chr1:51983040-51983146
Coord C2 exon
chr1:51983352-51983493
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCATTATGTCCCTTCATCAGTGT
3' ss Score
6.17
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGTATAAGAGGAAGCAGAAGCCAGCTGTAGACAGACTGTGTGTGGGAATCCCACCTGGAGAG
Seq A exon
TGTTTTGGGTTGCTGGGTGTGAATGGAGCCGGAAAGACGAGCACCTTCAAGATGCTAACCGGAGACTCTGTGGTCACCAGCGGAGAGGCCTACTTAGCAGGAAACAG
Seq C2 exon
CGTGCTGACGGAGATTGATGAAGTGCATCAGAATATGGGCTACTGCCCGCAGTTTGATGCCATCAATGACCTGCTGACGGGCAGAGAGCATCTGGAGTTTTATGCCATCCTGCGTGGCGTCCCTGAGAAAGAAGTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'45-47,'45-46,46-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATAAGAGGAAGCAGAAGCCA
R:
GCACACTTCTTTCTCAGGGACG
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]