GgaEX6050617 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54553013-54554176:-
Coord C1 exon
chrZ:54554114-54554176
Coord A exon
chrZ:54553551-54553657
Coord C2 exon
chrZ:54553013-54553154
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTTTTATATCCACAGTGT
3' ss Score
9.05
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATTTATAGAATGAAACGAAAGCCAGCAGTTGACAGGATATGTGTTGGAATCCCTCCTGGAGAG
Seq A exon
TGTTTTGGACTTCTGGGAGTAAATGGTGCTGGCAAGTCATCCACTTTCAAGATGCTAACTGGTGATACAGATGTGACAGGAGGAGATGCTTTTCTCAAAGGAAACAG
Seq C2 exon
TATCCTGTCGAACATCCAAGAAGTCCATCAGAACATGGGCTACTGTCCGCAGTTTGATGCTGTTAATGAACTGCTGACAGGGCGAGAACACTTGGAGTTCTTTGCACTCCTCAGAGGTGTTCCCGAGAAAGAAGTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'61-79,'61-78,62-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAGAATGAAACGAAAGCCAGCAGT
R:
CTTGCAAACTTCTTTCTCGGGA
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]