MmuEX6093501 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53051491-53054473:-
Coord C1 exon
chr4:53054411-53054473
Coord A exon
chr4:53053591-53053697
Coord C2 exon
chr4:53051491-53051632
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACCTAGTCTCGCTTTTCAGTGC
3' ss Score
7.09
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATCTATAGGAGGAAGCGGAAGCCTGCAGTCGACAGGATCTGCATCGGCATCCCTCCCGGAGAG
Seq A exon
TGCTTTGGACTCCTGGGAGTTAACGGAGCTGGGAAGTCAACAACTTTCAAGATGCTGACTGGAGACACCCCTGTGACCAGAGGGGATGCGTTCCTTAACAAAAACAG
Seq C2 exon
CATCTTATCAAATATCCATGAAGTACACCAGAACATGGGCTACTGCCCTCAGTTTGACGCCATCACAGAGCTGCTGACGGGAAGAGAGCATGTGGAGTTCTTTGCCCTCCTGAGGGGAGTCCCAGAAAAGGAAGTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'45-48,'45-47,46-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
PF0000522=ABC_tran=FE(24.1=100)
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTGCAGTCGACAGGAT
R:
TGCCAACTTCCTTTTCTGGGAC
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: