GgaALTA0001138-1/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2824477-2824849:-
Coord C1 exon
chr28:2824743-2824849
Coord A exon
NA
Coord C2 exon
chr28:2824477-2824515
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CACCATGTCCCATCCTGCAGCGT
3' ss Score
8.45
Exon sequences
Seq C1 exon
TGCTTCGGGCTGCTGGGGGTGAACGGTGCAGGGAAGACATCCACCTTCAAGATGCTGACGGGGGACACCGAAGTGACGCTGGGGGAGGCCTGGCTGAAGGGACACAG
Seq A exon
NA
Seq C2 exon
CGTGCTCACCGACCTGCAGGCTGTCCATCAGAACATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-48-54,48-53,48-52,48-51-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGTGCAGGGAAGACATC
R:
CCCATGTTCTGATGGACAGCC
Band lengths:
126-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]