MmuALTA0000859-2/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80013312-80013760:+
Coord C1 exon
chr10:80013312-80013418
Coord A exon
chr10:80013619-80013670
Coord C2 exon
chr10:80013671-80013760
Length
52 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
GCTTCCTGTCCCCACCCCAGCGT
3' ss Score
6.23
Exon sequences
Seq C1 exon
TGTTTCGGGCTGCTGGGTGTCAACGGGGCAGGGAAGACATCCACCTTCCGCATGGTGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAGTACTGGCAGGCCACAA
Seq A exon
CGTGGCCCAGGAGCGGTCTGCCGCACACCGCAGCATGGGCTACTGTCCCCAG
Seq C2 exon
TCTGATGCCATCTTCGACCTGCTGACCGGCCGGGAACATCTGGAACTGTTTGCTCGCCTGCGCGGGGTGCCCGAGGCCCAAGTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-65-85,65-84,65-83,65-82,65-81-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.1=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACATCCACCTTCCGCATG
R:
GGCGAGCAAACAGTTCCAGAT
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types