GgaALTA0001266-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002675 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr26:4081667-4082133:-
Coord C1 exon
chr26:4081930-4082133
Coord A exon
chr26:4081825-4081828
Coord C2 exon
chr26:4081667-4081824
Length
4 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
CCTCCAGCCCTGGCTCTCAGTTA
3' ss Score
3.69
Exon sequences
Seq C1 exon
CCAGCTGCAACCTGCACTGCCTGCGACAGAAAGTGGAGAAAAAGCTCAAATCGGCCATCAAAGCCCTGAAGAAATCCATCAACCAGGAGAGGTTCCTGCTGCGCTTCGCTGGGATGGAGTACGAGGTGGCGAGGAAGCTGAGCGTGGCCCCGGAGCGGCAGGAGAGCTGCGGGCCGGGCCAGCAGCGCCTGGGCACCAAGTGTG
Seq A exon
TTAG
Seq C2 exon
CTGCTCGCAGGGAACCTATTACCACGGGCAGACGGAGCAGTGCGTCCCCTGCCCCTCTGGCACCTACCAGGAGAAGGAAGGGCAGCTCTCCTGTGACCTGTGTCCCCGCAGCGATGCGTTCGGCCCCGTGGGAGCCACCAACATCACTGGCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-16-24,16-23,16-22-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076998=GCC2_GCC3=WD(100=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACGAGGTGGCGAGGAAG
R:
TAATAGGTTCCCTGCGAGCAG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]