GgaALTA0001873-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6821078-6821959:+
Coord C1 exon
chr17:6821078-6821270
Coord A exon
chr17:6821644-6821646
Coord C2 exon
chr17:6821647-6821959
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
AAATGTTTTTCCTTTGGTAGAAG
3' ss Score
4.31
Exon sequences
Seq C1 exon
GAACAGCTGGGATCCCAGAAGGCAGCGGCAGTTGTCTATGAGCTCTGCAGACAGTGCAGATGTCAAACACACCTTGGAGGAAGGAAAAAACTGGAGCGACTCAGTTGGTTTGTCCCGGTCGGTCCGGAAAGCGCAGGATTCACAGCAGCCTCCAAGAAAGATCAATGGCTGGAACTCTACGTCTGAATACCAG
Seq A exon
AAG
Seq C2 exon
CCTTCACAGGGAAGTGCTCTCAGACAGCAGTCCCTTGAGGATAAAGAAGAAAAAGTGCCACTGAGACAGAAGTTTGTGCACTCTGAGATCTCTGAGGCTGTTGAACGGGCTAGGAAGCGACGGGAGGAGGAAGAGCGGCGAGCCAGGGAGGAGCGTCTGGCAGCCTGTGCTGCCAAGCTGAAGCAACTTGATCAGAAATGCAAACTGGCTCAAAAGAGTGGGGAGACCCAGAAACACACGGAGAATGAAGACCTGCGACCCCCAAACACAGAGAAAAGTGCCGTGCAAGAAAATGGTCATGTTTTCCGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-14-14,14-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.934
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCACAGCAGCCTCCAAG
R:
CCTCAAGGGACTGCTGTCTGA
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]