HsaALTA0000898-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131459164-131464985:+
Coord C1 exon
chr9:131459164-131459356
Coord A exon
chr9:131464763-131464834
Coord C2 exon
chr9:131464835-131464985
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
CAGAGACATTCTCTTGGCAGAAG
3' ss Score
3.67
Exon sequences
Seq C1 exon
GAACAGTTGGGACCCTAGGAGGCAGCGGCAGTTGTCAATGAGCTCTGCAGACAGTGCGGACGCTAAGCGGACTCGAGAGGAAGGGAAGGACTGGGCTGAAGCAGTGGGTGCGTCCCGTGTGGTCCGAAAGGCGCCAGACCCTCAGCCACCGCCCAGGAAGCTTCATGGCTGGGCACCAGGCCCTGACTACCAG
Seq A exon
AAGTCATCAATGGGCAGCATGTTCCGGCAACAGTCCATCGAGGACAAGGAGGACAAGCCCCCACCAAGGCAG
Seq C2 exon
AAGTTCATTCAGTCAGAGATGTCCGAGGCGGTGGAGCGAGCCCGAAAGCGCCGGGAAGAAGAGGAGCGCCGAGCCCGGGAGGAGAGGCTGGCCGCCTGTGCTGCCAAACTCAAGCAGCTGGACCAGAAGTGTAAGCAGGCACGAAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-25-42,25-41,25-40,25-39-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGCTTCATGGCTGGG
R:
GCCTGCTTACACTTCTGGTCC
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains