BtaALTA0023614-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101611657-101616153:+
Coord C1 exon
chr11:101611657-101611849
Coord A exon
NA
Coord C2 exon
chr11:101615838-101616153
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TGACCGTCTTCTCTCAGCAGAAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAACAGTTGGGACCCCAGGAGGCAGCGGCAGTTATCCTTGAGCTCTGCAGACAGTGCTGATGCCAAGCGCACCCAAGAGGAAGGAAAAGACTGGAGTGAAACAGGAGGCGTGACCCGTGTCGTCCGGAAGGTGCCGGAACCTCAGCCGCCTTCCAGGAAGCTGCACAGCTGGGCGTCAGGCCCTGACTACCAG
Seq A exon
NA
Seq C2 exon
AAATCCTCCATGGGCACTGTATTTCGGCAGCAGTCTGCCGAGGACAAAGAGGACAAGCCCCCACCGCGGCAGAAGTTTGTCCAGTCTGAGATGTCCGAGGCTGTGGAGCGAGCCCGGAAGCGCCGGGAGGAGGAGGAGCGCCGTGCGCGCGAGGAAAGGCTGGCTGCCTGTGCTGCCAAACTCAAGCAGCTTGACCAGAAGTGCAAGCAGGCTCAGCGGGCCAGCGAGGCCCAGAAGCAGGCGGAGAAGGAAGCTCCCCGCTCTCCGGGGGCTGAGAAGGTGACTCCCCAGGAGAACGGCCCTGCCGTCCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-13-22,13-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCAGGAAGCTGCACAG
R:
CTTGTCCTCTTTGTCCTCGGC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development