GgaALTA0001991-2/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr8:6399736-6401001:+
Coord C1 exon
chr8:6399736-6399891
Coord A exon
chr8:6400831-6400837
Coord C2 exon
chr8:6400838-6401001
Length
7 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
ATGCCCTTTATTCCTCCAAGTGC
3' ss Score
3.92
Exon sequences
Seq C1 exon
TGCTCGGCCCGATGTGGCACCCAGGGGACGATGAAGAGGGAGGTGCGCTGCTCGGTGGAGGCAGCCCTCTGCGATGAGTCCCAGAAGCCCAGCAGTGAGAAGGACTGCACAGGACCGCCCTGCGACCGCCGCTGGACCGCCTCAGACTGGGGCCCG
Seq A exon
TGCTCAG
Seq C2 exon
GTTCGTGTGGTGAGGGACGCATAAGCCGTTTCGTCGCCTGTCGCAACCTGGAGGGCAAGGTGATCTCTGACACGCAGTGTGACCCAGCTGCCAAGCCCCTGGCCGTCCATCCGTGTGGAGACAAGGACTGCCCTGCACACTGGGTGGAGCAGGAGTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-23-23,23-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.6=76.9),PF0009014=TSP_1=PU(13.0=13.5)
A:
NA
C2:
PF0009014=TSP_1=PD(83.3=78.9),PF0009014=TSP_1=PU(12.3=12.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCCCAGCAGTGAGAAG
R:
CTTATGCGTCCCTCACCACAC
Band lengths:
100-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]