GgaEX1000827 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:6399736-6403381:+
Coord C1 exon
chr8:6399736-6399891
Coord A exon
chr8:6400831-6401001
Coord C2 exon
chr8:6403205-6403381
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATGCCCTTTATTCCTCCAAGTGC
3' ss Score
3.92
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGCTCGGCCCGATGTGGCACCCAGGGGACGATGAAGAGGGAGGTGCGCTGCTCGGTGGAGGCAGCCCTCTGCGATGAGTCCCAGAAGCCCAGCAGTGAGAAGGACTGCACAGGACCGCCCTGCGACCGCCGCTGGACCGCCTCAGACTGGGGCCCG
Seq A exon
TGCTCAGGTTCGTGTGGTGAGGGACGCATAAGCCGTTTCGTCGCCTGTCGCAACCTGGAGGGCAAGGTGATCTCTGACACGCAGTGTGACCCAGCTGCCAAGCCCCTGGCCGTCCATCCGTGTGGAGACAAGGACTGCCCTGCACACTGGGTGGAGCAGGAGTGGGACCAG
Seq C2 exon
TGTGATGCCAGCTGTGGACGAGGGACGAAGACCCGGGTTGTCCTGTGTGCAGGGCTGGAGAACGGGGTGTACAGGGAGTACCCTGAGAAGCGCTGCGAGGCTGGGCAGAAGCCTGAGGAGCAAGCTGCCTGCTTCATGAGGCCATGCTCAACCTGGTTCACTACCTCCTGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032-'23-25,'23-22,24-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.6=76.9),PF0009014=TSP_1=PU(13.0=13.5)
A:
PF0009014=TSP_1=PD(83.3=78.9),PF0009014=TSP_1=PU(12.3=12.3)
C2:
PF0009014=TSP_1=PD(84.2=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGATGAAGAGGGAGGTG
R:
CTTGCTCCTCAGGCTTCTGC
Band lengths:
256-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]