DreEX6026476 @ danRer10
Exon Skipping
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20907851-20910799:-
Coord C1 exon
chr2:20910644-20910799
Coord A exon
chr2:20910370-20910540
Coord C2 exon
chr2:20907851-20908027
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTGTCCTTCTCTAAGTGC
3' ss Score
6.13
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGTTCAGCGCGGTGTGGTGGCCGAGGGGTGAGGAGTCGTGATGTCCGCTGTTCAATGGAGGCCAGACTTTGTAATGAGTCCACCAAACCAGTCAGCCAGAGAGAGTGTGAGGGGCCGCCCTGTGACCGCAGGTGGACCGTCTCTGACTGGGGCCCG
Seq A exon
TGCTCAGGGCCGTGTGGGGAGGGCAGGATGAAACGGTACGTGGTGTGTAAGAACAGCAATGGGAAGGTGATTTCCGATGGTCAATGTGATCCAGAGCTGAAGCCACTGGCAGTACATCCATGCGGCGACAAAAACTGCCCCGCTCACTGGGTGGAGCAGGAGTGGGAACAG
Seq C2 exon
TGTAACTCCACGTGTGGCCGTGGGGTGAAGACACGTCAGGTGGTGTGTGCAGGGCTGGAGGCTGGTGTGTTTAAAGAGTTTCCTGAGCGGATGTGTGACAGAGCCCTCAGACCTGCAGATACCGCGGCCTGCTTTGAGAGACCCTGCTCCAAGTGGTTCACAACATCCTGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487-'17-24,'17-22,18-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.6=76.9),PF0009014=TSP_1=PU(13.0=13.5)
A:
PF0009014=TSP_1=PD(83.3=78.9),PF0009014=TSP_1=PU(12.3=12.3)
C2:
PF0009014=TSP_1=PD(84.2=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGATGTCCGCTGTTCAA
R:
TATCTGCAGGTCTGAGGGCTC
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]