MmuEX6099829 @ mm9
Exon Skipping
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:26958586-26960445:+
Coord C1 exon
chr2:26958586-26958741
Coord A exon
chr2:26959388-26959558
Coord C2 exon
chr2:26960269-26960445
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCTGTCACTCCCTCTTGCAGTGC
3' ss Score
10.41
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TGCACTGCCAAGTGTGGAGAGCGCAGTGTAGTGACCAGAGACATCCGCTGTTCCGAGGACGAGAAACTGTGTGACCCCAGCACCAAGCCTGTGGGAGAGAAGAACTGCACTGGGCCTCCCTGTGACCGCCAGTGGACTGTCTCGGACTGGGGACCG
Seq A exon
TGCAGTGGGAGCTGTGGACAGGGCCGCACTATCAGGCATGTGTACTGTAAGACCAGCGATGGACGGGTAGTTCCCGAGTCTCAGTGCCAGACAGAGACAAAGCCTCTGGCTATCCACCCCTGTGGGGACAAGAACTGCCCAGCACACTGGCTGGCTCAAGACTGGGAAAGG
Seq C2 exon
TGCAATACCACCTGTGGGCGTGGTGTGAAAAAGCGGTTAGTTCTCTGCATGGAGCTGGCCAACGGAAAGCCTCAGATCCGCAGTGGCCCTGAATGCGGGTTAGCCAGGAAGCCCCCTGAGGAGAGCACGTGCTTCGAGAGGCCTTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-'17-20,'17-18,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(14.6=10.5)
C2:
PF0009014=TSP_1=PD(80.5=55.9),PF0009014=TSP_1=PU(12.0=10.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAACTGTGTGACCCCAG
R:
TGTACCACTTGAAGCAAGGCC
Band lengths:
257-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: