RnoEX6016071 @ rn6
Exon Skipping
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5649156-5650855:+
Coord C1 exon
chr3:5649156-5649311
Coord A exon
chr3:5649928-5650098
Coord C2 exon
chr3:5650679-5650855
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCTGCCACTCTGTCTTGCAGTGC
3' ss Score
9.11
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TGCACAGCCAAGTGTGGGGAGCGCAGTGTAGTGACCAGAGACATCCGGTGTTCCGAGGACGAGAGACTGTGTGACCCCAACACCAGGCCTGTGGGAGAGAAGAACTGCACGGGACCTCCCTGTGATCGCCAGTGGACTGTCTCAGACTGGGGACCG
Seq A exon
TGCAGTGGGAGCTGTGGACAGGGCCGCACAATCAGGCACGTGTACTGTAAGACCAGCGACGGACGGGTAGTCCCCGAGTCCCAGTGCCAGACAGAGACAAAGCCTCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCAGCACACTGGCTGGCTCAGGACTGGGAAAGG
Seq C2 exon
TGCAACACTACCTGTGGGCGTGGCGTGAAGAAGCGGTTAGTTCTTTGCATGGAGCTGGCCAATGGGAAGCCTCAGATGCGAAGTGGTTCTGAATGTGGGCTAGCCAGGAAGCCCCCTGAGGAAAGTACGTGCTTCGAGAGACCTTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-'23-31,'23-29,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
PF0009014=TSP_1=PD(81.8=78.9)
C2:
PF0009014=TSP_1=PU(12.0=10.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCAGAGACATCCGGTGTT
R:
TACTTTCCTCAGGGGGCTTCC
Band lengths:
252-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]