DreEX6014355 @ danRer10
Exon Skipping
Gene
ENSDARG00000074033 | adamtsl2
Description
ADAMTS-like 2 [Source:ZFIN;Acc:ZDB-GENE-070705-558]
Coordinates
chr5:65212054-65214851:-
Coord C1 exon
chr5:65214696-65214851
Coord A exon
chr5:65214212-65214382
Coord C2 exon
chr5:65212054-65212230
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTACTTTTATTTGTGTTTAGTGT
3' ss Score
7.8
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TGTCCAGCTAAATGTGGTCGCAAGAGTCTGGTCACTCGAGAGGTCAGATGCTCAGATGAGGCCCATGCGTGTGATGAGGAAACTCGTCCACCATCGACCAAAAATTGCACAGGCCCTCCATGTGAGCGCCAGTGGACAGCATCCGAGTGGGGACCG
Seq A exon
TGTTCAGGGATCTGTGGTCATGGAAAAACGGTGAGGCATGTGTACTGCAAAACAGCAGAGGGCCGAGTGGTACCCGAGTCTCAGTGCTCACCTGAAAACAAGCCTCTGGCTATTCACCCCTGCGGAGACAATGAATGTGCTCCACACTGGCTGGCCCAGGACTGGGAGAGG
Seq C2 exon
TGCAACACAACATGTGGACGGGGTGTGAAGAGAAGGACAGTGCTGTGTGTCAGCATTACAAGTGGGAAGGTCCAGATAAATGAGGATGAGGAATGTGACGCCAGCAAGAGGCCAGCGGATGAGGACACCTGCTTCGAGAGGCCTTGCTTTAAGTGGTACACAACGCCGTGGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074033-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
C2:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTCGTCCACCATCGACC
R:
CACGGCGTTGTGTACCACTTA
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]