BtaEX6047341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104501057-104502630:+
Coord C1 exon
chr11:104501057-104501212
Coord A exon
chr11:104501585-104501755
Coord C2 exon
chr11:104502454-104502630
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCCCGGGTGTCCCCCTGCAGTGC
3' ss Score
8.47
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TGCACGGCCAAGTGTGGGGAGCGAAGCGTGGTGACGCGGGACATCCGCTGCTCGGAGGACGAGAAGCTGTGTGACCCCAACACCAGGCCCGTGGGGGAGAAGGACTGCACAGGGCCCCCCTGCGACCGCCAGTGGACTGTCTCCGACTGGGGGCCG
Seq A exon
TGCAGCGGCAGCTGTGGGCAGGGCCGCATGATCAGACACGTGTACTGCAAGACCAGCGATGGACGGGTCGTGCCCGAGTCTCAGTGCCAGATGGAGACCAAGCCCCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
Seq C2 exon
TGCAACACCACCTGTGGCAGAGGCGTGAAGAAGAGGCTGGTCCTGTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGCGGCCCCGAGTGTGGCCTGGCCAAGAAGCCCCCCGAGGAGAGCACTTGCTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-'17-21,'17-19,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
C2:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCTGTGTGACCCCAAC
R:
GGTGTACCACTTGAAGCAGGG
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]