HsaEX6063765 @ hg19
Exon Skipping
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:14631]
Coordinates
chr9:136433725-136435629:+
Coord C1 exon
chr9:136433725-136433880
Coord A exon
chr9:136434530-136434700
Coord C2 exon
chr9:136435453-136435629
Length
171 bp
Sequences
Splice sites
3' ss Seq
GCCTGTCCTCTCCCCTGCAGTGC
3' ss Score
10.84
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TGCACTGCCAAGTGTGGGGAGCGCAGTGTGGTGACCAGGGACATCCGCTGCTCGGAGGATGAGAAGCTGTGTGACCCCAACACCAGGCCTGTAGGGGAGAAGAACTGCACGGGCCCGCCCTGTGACCGGCAGTGGACCGTCTCCGACTGGGGACCG
Seq A exon
TGCAGTGGAAGCTGCGGGCAAGGCCGCACCATCAGGCACGTGTACTGCAAGACCAGCGACGGACGGGTAGTACCTGAGTCCCAGTGCCAGATGGAGACCAAGCCTCTGGCCATCCACCCCTGTGGGGACAAAAACTGTCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
Seq C2 exon
TGCAACACCACCTGCGGGCGCGGGGTCAAGAAGCGGCTGGTGCTCTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGTGGCCCCGAGTGCGGGCTCGCCAAGAAGCCTCCCGAGGAGAGCACGTGTTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
C2:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAGGATGAGAAGCTGTGT
R:
CTCGAAACACGTGCTCTCCTC
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)