MmuALTA1027747-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27103066-27104038:+
Coord C1 exon
chr2:27103066-27103221
Coord A exon
chr2:27103868-27103872
Coord C2 exon
chr2:27103873-27104038
Length
5 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCTGTCACTCCCTCTTGCAGTGC
3' ss Score
10.41
Exon sequences
Seq C1 exon
TGCACTGCCAAGTGTGGAGAGCGCAGTGTAGTGACCAGAGACATCCGCTGTTCCGAGGACGAGAAACTGTGTGACCCCAGCACCAAGCCTGTGGGAGAGAAGAACTGCACTGGGCCTCCCTGTGACCGCCAGTGGACTGTCTCGGACTGGGGACCG
Seq A exon
TGCAG
Seq C2 exon
TGGGAGCTGTGGACAGGGCCGCACTATCAGGCATGTGTACTGTAAGACCAGCGATGGACGGGTAGTTCCCGAGTCTCAGTGCCAGACAGAGACAAAGCCTCTGGCTATCCACCCCTGTGGGGACAAGAACTGCCCAGCACACTGGCTGGCTCAAGACTGGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-27-30,27-29,27-28-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
NA
C2:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(14.6=10.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAAGAACTGCACTGGGC
R:
TACACATGCCTGATAGTGCGG
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types