BtaALTA0001958-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104501057-104501755:+
Coord C1 exon
chr11:104501057-104501212
Coord A exon
chr11:104501585-104501589
Coord C2 exon
chr11:104501590-104501755
Length
5 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
CCCCGGGTGTCCCCCTGCAGTGC
3' ss Score
8.47
Exon sequences
Seq C1 exon
TGCACGGCCAAGTGTGGGGAGCGAAGCGTGGTGACGCGGGACATCCGCTGCTCGGAGGACGAGAAGCTGTGTGACCCCAACACCAGGCCCGTGGGGGAGAAGGACTGCACAGGGCCCCCCTGCGACCGCCAGTGGACTGTCTCCGACTGGGGGCCG
Seq A exon
TGCAG
Seq C2 exon
CGGCAGCTGTGGGCAGGGCCGCATGATCAGACACGTGTACTGCAAGACCAGCGATGGACGGGTCGTGCCCGAGTCTCAGTGCCAGATGGAGACCAAGCCCCTGGCCATCCACCCCTGTGGGGACAAGAACTGCCCCGCCCACTGGCTGGCCCAGGACTGGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-17-20,17-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
NA
C2:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(10.7=10.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAGGACTGCACAGGG
R:
TACACGTGTCTGATCATGCGG
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development