DreALTA0025316-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000075487 | si:ch211-267e7.3
Description
si:ch211-267e7.3 [Source:ZFIN;Acc:ZDB-GENE-070912-265]
Coordinates
chr2:20910370-20910799:-
Coord C1 exon
chr2:20910644-20910799
Coord A exon
chr2:20910534-20910540
Coord C2 exon
chr2:20910370-20910533
Length
7 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
GTTTTTTGTCCTTCTCTAAGTGC
3' ss Score
6.13
Exon sequences
Seq C1 exon
TGTTCAGCGCGGTGTGGTGGCCGAGGGGTGAGGAGTCGTGATGTCCGCTGTTCAATGGAGGCCAGACTTTGTAATGAGTCCACCAAACCAGTCAGCCAGAGAGAGTGTGAGGGGCCGCCCTGTGACCGCAGGTGGACCGTCTCTGACTGGGGCCCG
Seq A exon
TGCTCAG
Seq C2 exon
GGCCGTGTGGGGAGGGCAGGATGAAACGGTACGTGGTGTGTAAGAACAGCAATGGGAAGGTGATTTCCGATGGTCAATGTGATCCAGAGCTGAAGCCACTGGCAGTACATCCATGCGGCGACAAAAACTGCCCCGCTCACTGGGTGGAGCAGGAGTGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075487-17-23,17-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(81.6=76.9),PF0009014=TSP_1=PU(13.0=13.5)
A:
NA
C2:
PF0009014=TSP_1=PD(83.3=78.9),PF0009014=TSP_1=PU(12.3=12.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCAGAGAGAGTGTGAGG
R:
GTACCGTTTCATCCTGCCCTC
Band lengths:
97-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]