GgaALTA1003552-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6987779-6988673:+
Coord C1 exon
chr17:6987779-6987934
Coord A exon
chr17:6988525-6988529
Coord C2 exon
chr17:6988530-6988673
Length
5 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGTGCCTACTGTGGTTTCAGTGC
3' ss Score
7.5
Exon sequences
Seq C1 exon
TGCTCTGCGCGGTGCGGTGAGCGCAGCGTGGTGACGCGGGACATCCGCTGCTCGGAGGAGGAGAAGCTGTGTGATGCCAGCGCCCGGCCCCTGGCTGAGAAGAACTGCACCGGGCCTCCCTGTGACCGCCAGTGGACCGTGTCTGACTGGGGACCG
Seq A exon
TGCAG
Seq C2 exon
CGGTGGCTGCGGGCAGGGCAGGATGATCCGGCACGTGTACTGCAAGACCAGCGATGGGCGCGTGGTGCCGGAGTCACAGTGCAACCTGGAGACAAAGCCACTGGCCATCCATCCCTGCGGGGACAAGAACTGCCCATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-23-31,23-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(14.5=15.4)
A:
NA
C2:
PF0009014=TSP_1=PD(81.8=78.9),PF0009014=TSP_1=PU(15.3=15.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGAGAAGAACTGCACC
R:
CAGTACACGTGCCGGATCATC
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]