GgaALTA0002986-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005824 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr15:7838874-7840065:-
Coord C1 exon
chr15:7839864-7840065
Coord A exon
chr15:7838956-7838959
Coord C2 exon
chr15:7838874-7838955
Length
4 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGAGCACTGATCTTTTTCAGACA
3' ss Score
6.11
Exon sequences
Seq C1 exon
CAACACTCCATCCATCTGGAGCCCAGCACATGCGTTGGCTTGGCACCTTAGCGAAGACTTCAGAAATAAACCAGCTGCATGGGCAACTGCAAAATGTATAGAATGGGACAGGGAGGAAGAGAAGCTTCCAAACTTCATGGAAGAAATTATAGATTGCCCTTGCACCTTGGCACAGGCAAGAGCTGACACTGGCAGGTTCCAT
Seq A exon
ACAG
Seq C2 exon
ATTACGGCTGTGACATTGAAAAGGGAAGTGTGTGTACTTACCACCCTGGCGCTGTGCACTGTGTAAGGGCCATTCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824-8-8,8-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0378212=AMOP=PU(27.4=58.8)
A:
NA
C2:
PF0378212=AMOP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGCAAGAGCTGACACTG
R:
GAATGGCCCTTACACAGTGCA
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]