MmuALTA1002824-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006342 | Susd2
Description
sushi domain containing 2 [Source:MGI Symbol;Acc:MGI:1918983]
Coordinates
chr10:75640189-75640657:-
Coord C1 exon
chr10:75640456-75640657
Coord A exon
chr10:75640243-75640274
Coord C2 exon
chr10:75640189-75640242
Length
32 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGC
5' ss Score
5.42
3' ss Seq
AGGCACTGGATATTCTGCAGACT
3' ss Score
2.59
Exon sequences
Seq C1 exon
GGATGTGCGGGCGCTCTGGACCAACGATCACGCACTGGCCTGGCACCTGGGTGACGACTTCCGGGCAGACTCCGTAGCCTGGGCCCGAGCACAGTGCCTGGCCTGGGAGGCATTGGAAGACCAACTACCCAACTTCCTGACGGAGCTGCCAGACTGCCCCTGCACCCTGGCCCAGGCCAGGGCTGATTCTGGCCGCTTCTTC
Seq A exon
ACTGACTATGGTTGTGACATTGAACATGGCAG
Seq C2 exon
CGTATGCACCTACCACCCAGGGGCTGTGCACTGTGTGCGCTCTGTGCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006342-5-7,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0378212=AMOP=PU(27.4=58.8)
A:
NA
C2:
PF0378212=AMOP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGGCATTGGAAGACCA
R:
CCCTGGGTGGTAGGTGCATA
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types