RnoALTA0039384-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033389 | Susd2
Description
sushi domain containing 2 [Source:RGD Symbol;Acc:1308595]
Coordinates
chr20:13968493-13968923:+
Coord C1 exon
chr20:13968493-13968694
Coord A exon
chr20:13968877-13968908
Coord C2 exon
chr20:13968909-13968923
Length
32 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGC
5' ss Score
5.42
3' ss Seq
GCCCCCTGGATGTTCTGCAGACT
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGATGTGCTGGCCCTCTGGACCAATGATCATGCCCTGGCTTGGCATCTGGGTGATGACTTCCGGGCAGACTCTGTAGCCTGGGCCCGTGAACAATGCCTGACCTGGGAGGCGTTAGAAGACCAACTACCCAACTTCCTGACAGAACTGCCAGACTGCCCGTGCACACTGGCTCAGGCCAGGGCTGACTCTGGCCGATTCTTC
Seq A exon
ACTGACTATGGTTGTGACATTGAACATGGCAG
Seq C2 exon
CGTGTGCACCTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033389-6-9,6-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0378212=AMOP=PU(27.4=58.8)
A:
NA
C2:
PF0378212=AMOP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]