GgaALTA0003835-3/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9900307-9901441:+
Coord C1 exon
chr15:9900307-9900486
Coord A exon
chr15:9901108-9901140
Coord C2 exon
chr15:9901141-9901441
Length
33 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
ATGAGGTTTTTGTCGCTCAGCTG
3' ss Score
3.03
Exon sequences
Seq C1 exon
AACTCCTGCACGAGCCCACTTGGAGATACCAAATCCACGGTATCTAGGGCCTGCAATCTCATCTGGAGCTATCTACTTGGCCTCCTCCTACCAAGATAAATTAAGGGTGATCTGCTGTAAGGGCAATCTGGTGAAGGAGACCAACAATGAGCACCACAGAGGATCTTCTGCTACACGCAG
Seq A exon
CTGTTCGCGTCCATTATTTTTGAATGACAGCAG
Seq C2 exon
CCCTAACAAGAGAGGTCCGCCCACATACAACGAGCACATAACCAAGCGGGTAGCGTCGAGCCCAGGACCACCGGAAGGTCCCAGCCACCCTCGAGAACCAAGCACACCCCATCGGTACCGTGAGGGCAGGACAGAGCTGCGGAGGGACAAGTCACCTGGGCGACCACTGGAGAGGGAGAAATCTCCAGGCCGGCTTCTGAGCACCCGCAGAGAAAGGTCCCCTGGAAGACTGTTTGACGAAAGCAGCCGAGGACGGATGCCTGTGAGTGGTGCCAGAACTCCTCTTGCTCAAGTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-58-62,58-61,58-60-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PD(5.7=26.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTAAGGGCAATCTGGTG
R:
CGCTTGGTTATGTGCTCGTTG
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]